rs8273790 SNP Detail

Summary

• ID
  rs8273790
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157970934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                    NAAA AACAGGGGTT
  TTTTTTTTTT TTTCNGTCAT TTTCCACAAA TCCTATCNCC ATAGGANACC AGGAAATCCT
  GAGCCCACCT CTCTGGCCTC CCTTGGAGCA GTGTCAGTAN CACCCTCTTT AGTGGGGACG
  CTGAGCCCTT TGGCACCNCC AGGTCTCGTT GGCAAACCTC TCTATTCCTC AGTTCTGGCT
  ACGTTCCTGC CCTCAGGCCC TGCCTGGTCC AGGGCCCCTN TTTACCCACC TGAACCCTNC
  M
  AACCCCAGCT CCCTGCTCCA GCCCTGGTCT ATGGGATTGG CTCAATCCTT TCCCACTGGG
  AAGCTGAGAG TAGTCCCAAA ANCCANCCAN AACCCCAACT CACACTGCAN ACTCCCACCT
  CCCTCCCAGT TCCTCCNGCC ATCCCTTCTG NCTGTGGTGN GCTTCCCACC TCTCTGTCTC
  CACCCTGCTT TCTCCANCCC ANTTCCTCTG CCTGTTCCTG CTCANNAGTC GAGGCCCAGT
  TCAACCNNGG CTCTTTCNAA GAGGCTTCTG GTTTCCCCCC CCCCCCNGGC CNCCCTNGGG
  GCCCCCNCA                                                        
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	NZB/BlNJ
ss12771050	Tgm2_JC8148_5	ROCHEBIO	RPAMM	f	SNP	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	NZB/BlNJ
rs8273790					SNP	A	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157970934 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1419 bp distal
Rr568654	regulatory region 568654	279 bp distal
Rr568655	regulatory region 568655	786 bp proximal
Rr568656	regulatory region 568656	995 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1826 bp upstream
Tssr27211	transcription start site region 27211	1704 bp upstream
Tssr27212	transcription start site region 27212	321 bp upstream
Tssr27213	transcription start site region 27213	395 bp downstream