rs8273792 SNP Detail

Summary

• ID
  rs8273792
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        NAAAAACAGG GGTTTTTTTT TTTTTTTCNG TCATTTTCCA
  CAAATCCTAT CNCCATAGGA NACCAGGAAA TCCTGAGCCC ACCTCTCTGG CCTCCCTTGG
  AGCAGTGTCA GTANCACCCT CTTTAGTGGG GACGCTGAGC CCTTTGGCAC CNCCAGGTCT
  CGTTGGCAAA CCTCTCTATT CCTCAGTTCT GGCTACGTTC CTGCCCTCAG GCCCTGCCTG
  GTCCAGGGCC CCTNTTTACC CACCTGAACC CTNCNAACCC CAGCTCCCTG CTCCAGCCCT
  GGTCTATGGG ATTGGCTCAA TCCTTTCCCA CTGGGAAGCT GAGAGTAGTC CCAAAANCCA
  S
  CCANAACCCC AACTCACACT GCANACTCCC ACCTCCCTCC CAGTTCCTCC NGCCATCCCT
  TCTGNCTGTG GTGNGCTTCC CACCTCTCTG TCTCCACCCT GCTTTCTCCA NCCCANTTCC
  TCTGCCTGTT CCTGCTCANN AGTCGAGGCC CAGTTCAACC NNGGCTCTTT CNAAGAGGCT
  TCTGGTTTCC CCCCCCCCCC NGGCCNCCCT NGGGGCCCCC NCA                  
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12771052	Tgm2_JC8148_7	ROCHEBIO	RPAMM	f	SNP	C	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8273792					SNP	C	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971020 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1505 bp distal
Rr568654	regulatory region 568654	365 bp distal
Rr568655	regulatory region 568655	700 bp proximal
Rr568656	regulatory region 568656	909 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1912 bp upstream
Tssr27211	transcription start site region 27211	1790 bp upstream
Tssr27212	transcription start site region 27212	407 bp upstream
Tssr27213	transcription start site region 27213	309 bp downstream