rs8273793 SNP Detail

Summary

• ID
  rs8273793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                   NAAA AACAGGGGTT TTTTTTTTTT TTTCNGTCAT TTTCCACAAA
  TCCTATCNCC ATAGGANACC AGGAAATCCT GAGCCCACCT CTCTGGCCTC CCTTGGAGCA
  GTGTCAGTAN CACCCTCTTT AGTGGGGACG CTGAGCCCTT TGGCACCNCC AGGTCTCGTT
  GGCAAACCTC TCTATTCCTC AGTTCTGGCT ACGTTCCTGC CCTCAGGCCC TGCCTGGTCC
  AGGGCCCCTN TTTACCCACC TGAACCCTNC NAACCCCAGC TCCCTGCTCC AGCCCTGGTC
  TATGGGATTG GCTCAATCCT TTCCCACTGG GAAGCTGAGA GTAGTCCCAA AANCCANCCA
  R
  AACCCCAACT CACACTGCAN ACTCCCACCT CCCTCCCAGT TCCTCCNGCC ATCCCTTCTG
  NCTGTGGTGN GCTTCCCACC TCTCTGTCTC CACCCTGCTT TCTCCANCCC ANTTCCTCTG
  CCTGTTCCTG CTCANNAGTC GAGGCCCAGT TCAACCNNGG CTCTTTCNAA GAGGCTTCTG
  GTTTCCCCCC CCCCCCNGGC CNCCCTNGGG GCCCCCNCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/Lac
ss12771053	Tgm2_JC8148_8	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/Lac
rs8273793					SNP	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971024 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1509 bp distal
Rr568654	regulatory region 568654	369 bp distal
Rr568655	regulatory region 568655	696 bp proximal
Rr568656	regulatory region 568656	905 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1916 bp upstream
Tssr27211	transcription start site region 27211	1794 bp upstream
Tssr27212	transcription start site region 27212	411 bp upstream
Tssr27213	transcription start site region 27213	305 bp downstream