rs8273794 SNP Detail

Summary

• ID
  rs8273794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                               NAAA
  AACAGGGGTT TTTTTTTTTT TTTCNGTCAT TTTCCACAAA TCCTATCNCC ATAGGANACC
  AGGAAATCCT GAGCCCACCT CTCTGGCCTC CCTTGGAGCA GTGTCAGTAN CACCCTCTTT
  AGTGGGGACG CTGAGCCCTT TGGCACCNCC AGGTCTCGTT GGCAAACCTC TCTATTCCTC
  AGTTCTGGCT ACGTTCCTGC CCTCAGGCCC TGCCTGGTCC AGGGCCCCTN TTTACCCACC
  TGAACCCTNC NAACCCCAGC TCCCTGCTCC AGCCCTGGTC TATGGGATTG GCTCAATCCT
  TTCCCACTGG GAAGCTGAGA GTAGTCCCAA AANCCANCCA NAACCCCAAC TCACACTGCA
  R
  ACTCCCACCT CCCTCCCAGT TCCTCCNGCC ATCCCTTCTG NCTGTGGTGN GCTTCCCACC
  TCTCTGTCTC CACCCTGCTT TCTCCANCCC ANTTCCTCTG CCTGTTCCTG CTCANNAGTC
  GAGGCCCAGT TCAACCNNGG CTCTTTCNAA GAGGCTTCTG GTTTCCCCCC CCCCCCNGGC
  CNCCCTNGGG GCCCCCNCA                                             
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ
ss12771054	Tgm2_JC8148_9	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ
rs8273794					SNP	A	G	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971044 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1529 bp distal
Rr568654	regulatory region 568654	389 bp distal
Rr568655	regulatory region 568655	676 bp proximal
Rr568656	regulatory region 568656	885 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1936 bp upstream
Tssr27211	transcription start site region 27211	1814 bp upstream
Tssr27212	transcription start site region 27212	431 bp upstream
Tssr27213	transcription start site region 27213	285 bp downstream