rs8273795 SNP Detail

Summary

• ID
  rs8273795
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACGTTCC TGCCCTCAGG
  CCCTGCCTGG TCCAGGGCCC CTCTCTACCC ACCTGAACCC TGCCAACCCC AGCTCCCTGC
  TCCAGCCCTG GTCTATGGGA TTGGCTCAAT CCTTTCCCAC TGGGAAGCTG AGAGTAGTCC
  CAAAAGCCAG CCAGAACCCC AACTCACACT GCAGACTCCC ACCTCCCTCC CAGTTCCTCC
  W
  GCCATCCCTT CTGCCTGTGG TGAGCTTCCC ACCTCTCTGT CTCCACCCTG CTTTCTCCAG
  CCCAGTTCCT CTGCCTGTTC CTGCTCAGCA GTCGAGGCCC AGTTCAACCA GGGCTCATTC
  CAAGAGGCTT CTGGTTTCCC CTCCCCCCAG GCCTCCCTTG GGGCCCCTCA CCAGATCATC
  TCGCTCTTGT TGCTCTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12771055	Tgm2_JC8148_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8273795					SNP	T	T	T	T	T	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971071 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1556 bp distal
Rr568654	regulatory region 568654	416 bp distal
Rr568655	regulatory region 568655	649 bp proximal
Rr568656	regulatory region 568656	858 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1963 bp upstream
Tssr27211	transcription start site region 27211	1841 bp upstream
Tssr27212	transcription start site region 27212	458 bp upstream
Tssr27213	transcription start site region 27213	258 bp downstream