rs8273796 SNP Detail

Summary

• ID
  rs8273796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGCCCT GCCTGGTCCA
  GGGCCCCTCT CTACCCACCT GAACCCTGCC AACCCCAGCT CCCTGCTCCA GCCCTGGTCT
  ATGGGATTGG CTCAATCCTT TCCCACTGGG AAGCTGAGAG TAGTCCCAAA AGCCAGCCAG
  AACCCCAACT CACACTGCAG ACTCCCACCT CCCTCCCAGT TCCTCCTGCC ATCCCTTCTG
  Y
  CTGTGGTGAG CTTCCCACCT CTCTGTCTCC ACCCTGCTTT CTCCAGCCCA GTTCCTCTGC
  CTGTTCCTGC TCAGCAGTCG AGGCCCAGTT CAACCAGGGC TCATTCCAAG AGGCTTCTGG
  TTTCCCCTCC CCCCAGGCCT CCCTTGGGGC CCCTCACCAG ATCATCTCGC TCTTGTTGCT
  CTCCAGCTCC CCGAACTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12771056	Tgm2_JC8148_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8273796					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971085 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1570 bp distal
Rr568654	regulatory region 568654	430 bp distal
Rr568655	regulatory region 568655	635 bp proximal
Rr568656	regulatory region 568656	844 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27210	transcription start site region 27210	1977 bp upstream
Tssr27211	transcription start site region 27211	1855 bp upstream
Tssr27212	transcription start site region 27212	472 bp upstream
Tssr27213	transcription start site region 27213	244 bp downstream