rs8273798 SNP Detail

Summary

• ID
  rs8273798
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                 N AAAAACAGGG GTTTTTTTTT TTTTTTCNGT
  CATTTTCCAC AAATCCTATC NCCATAGGAN ACCAGGAAAT CCTGAGCCCA CCTCTCTGGC
  CTCCCTTGGA GCAGTGTCAG TANCACCCTC TTTAGTGGGG ACGCTGAGCC CTTTGGCACC
  NCCAGGTCTC GTTGGCAAAC CTCTCTATTC CTCAGTTCTG GCTACGTTCC TGCCCTCAGG
  CCCTGCCTGG TCCAGGGCCC CTNTTTACCC ACCTGAACCC TNCNAACCCC AGCTCCCTGC
  TCCAGCCCTG GTCTATGGGA TTGGCTCAAT CCTTTCCCAC TGGGAAGCTG AGAGTAGTCC
  CAAAANCCAN CCANAACCCC AACTCACACT GCANACTCCC ACCTCCCTCC CAGTTCCTCC
  NGCCATCCCT TCTGNCTGTG GTGNGCTTCC CACCTCTCTG TCTCCACCCT GCTTTCTCCA
  S
  CCCANTTCCT CTGCCTGTTC CTGCTCANNA GTCGAGGCCC AGTTCAACCN NGGCTCTTTC
  NAAGAGGCTT CTGGTTTCCC CCCCCCCCCN GGCCNCCCTN GGGGCCCCCN CA        
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss12771058	Tgm2_JC8148_13	ROCHEBIO	RPAMM	f	SNP	C	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs8273798					SNP	C	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971131 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1616 bp distal
Rr568654	regulatory region 568654	476 bp distal
Rr568655	regulatory region 568655	589 bp proximal
Rr568656	regulatory region 568656	798 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27211	transcription start site region 27211	1901 bp upstream
Tssr27212	transcription start site region 27212	518 bp upstream
Tssr27213	transcription start site region 27213	198 bp downstream