rs8273799 SNP Detail

Summary

• ID
  rs8273799
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                            NAAAAA CAGGGGTTTT TTTTTTTTTT TCNGTCATTT
  TCCACAAATC CTATCNCCAT AGGANACCAG GAAATCCTGA GCCCACCTCT CTGGCCTCCC
  TTGGAGCAGT GTCAGTANCA CCCTCTTTAG TGGGGACGCT GAGCCCTTTG GCACCNCCAG
  GTCTCGTTGG CAAACCTCTC TATTCCTCAG TTCTGGCTAC GTTCCTGCCC TCAGGCCCTG
  CCTGGTCCAG GGCCCCTNTT TACCCACCTG AACCCTNCNA ACCCCAGCTC CCTGCTCCAG
  CCCTGGTCTA TGGGATTGGC TCAATCCTTT CCCACTGGGA AGCTGAGAGT AGTCCCAAAA
  NCCANCCANA ACCCCAACTC ACACTGCANA CTCCCACCTC CCTCCCAGTT CCTCCNGCCA
  TCCCTTCTGN CTGTGGTGNG CTTCCCACCT CTCTGTCTCC ACCCTGCTTT CTCCANCCCA
  D
  TTCCTCTGCC TGTTCCTGCT CANNAGTCGA GGCCCAGTTC AACCNNGGCT CTTTCNAAGA
  GGCTTCTGGT TTCCCCCCCC CCCCNGGCCN CCCTNGGGGC CCCCNCA              
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
ss12771059	Tgm2_JC8148_14	ROCHEBIO	RPAMM	f	SNP	T	G	G	G	G	G	G	T	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
rs8273799					SNP	T	G	G	G	G	G	G	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971136 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1621 bp distal
Rr568654	regulatory region 568654	481 bp distal
Rr568655	regulatory region 568655	584 bp proximal
Rr568656	regulatory region 568656	793 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27211	transcription start site region 27211	1906 bp upstream
Tssr27212	transcription start site region 27212	523 bp upstream
Tssr27213	transcription start site region 27213	193 bp downstream