rs8273800 SNP Detail

Summary

• ID
  rs8273800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

   NAAAAACAG GGGTTTTTTT TTTTTTTTCN GTCATTTTCC ACAAATCCTA TCNCCATAGG
  ANACCAGGAA ATCCTGAGCC CACCTCTCTG GCCTCCCTTG GAGCAGTGTC AGTANCACCC
  TCTTTAGTGG GGACGCTGAG CCCTTTGGCA CCNCCAGGTC TCGTTGGCAA ACCTCTCTAT
  TCCTCAGTTC TGGCTACGTT CCTGCCCTCA GGCCCTGCCT GGTCCAGGGC CCCTNTTTAC
  CCACCTGAAC CCTNCNAACC CCAGCTCCCT GCTCCAGCCC TGGTCTATGG GATTGGCTCA
  ATCCTTTCCC ACTGGGAAGC TGAGAGTAGT CCCAAAANCC ANCCANAACC CCAACTCACA
  CTGCANACTC CCACCTCCCT CCCAGTTCCT CCNGCCATCC CTTCTGNCTG TGGTGNGCTT
  CCCACCTCTC TGTCTCCACC CTGCTTTCTC CANCCCANTT CCTCTGCCTG TTCCTGCTCA
  R
  NAGTCGAGGC CCAGTTCAAC CNNGGCTCTT TCNAAGAGGC TTCTGGTTTC CCCCCCCCCC
  CNGGCCNCCC TNGGGGCCCC CNCA                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
ss12771060	Tgm2_JC8148_15	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
rs8273800					SNP	A	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971159 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1644 bp distal
Rr568654	regulatory region 568654	504 bp distal
Rr568655	regulatory region 568655	561 bp proximal
Rr568656	regulatory region 568656	770 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27211	transcription start site region 27211	1929 bp upstream
Tssr27212	transcription start site region 27212	546 bp upstream
Tssr27213	transcription start site region 27213	170 bp downstream