rs8273802 SNP Detail

Summary

• ID
  rs8273802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157971181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCCCAC TGGGAAGCTG
  AGAGTAGTCC CAAAAGCCAG CCAGAACCCC AACTCACACT GCAGACTCCC ACCTCCCTCC
  CAGTTCCTCC TGCCATCCCT TCTGCCTGTG GTGAGCTTCC CACCTCTCTG TCTCCACCCT
  GCTTTCTCCA GCCCAGTTCC TCTGCCTGTT CCTGCTCAGC AGTCGAGGCC CAGTTCAACC
  R
  GGGCTCATTC CAAGAGGCTT CTGGTTTCCC CTCCCCCCAG GCCTCCCTTG GGGCCCCTCA
  CCAGATCATC TCGCTCTTGT TGCTCTCCAG CTCCCCGAAC TCATTTCGGA AGTACTCGAT
  GAGCAGGTTG CTGTTCTGGT CGTGGGCGGA GTTGTAGTTG GTCACCACTC TGGTAGGGAT
  GCCGAGGCAC CGCAGCACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
ss12771062	Tgm2_JC8148_17	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G	A
ss24751034	Tgm2_JC8148_20	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ
rs8273802					SNP	A	A	A	A	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157971181 () rs orientation: forward

Symbol	Name	Function Class
Rr568653	regulatory region 568653	1666 bp distal
Rr568654	regulatory region 568654	526 bp distal
Rr568655	regulatory region 568655	539 bp proximal
Rr568656	regulatory region 568656	748 bp proximal
Tgm2	transglutaminase 2, C polypeptide	within coordinates
Tssr27211	transcription start site region 27211	1951 bp upstream
Tssr27212	transcription start site region 27212	568 bp upstream
Tssr27213	transcription start site region 27213	148 bp downstream