rs8273909 SNP Detail

Summary

• ID
  rs8273909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55593770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCATGGGC CTCAAGTCGG
  GTTTGGGGGT GATGAAGAAG AAAGGGAAGG AAGGGAAAAG GTGGAACATG AGCCCCAGAG
  GAATGCGTGT GAGGCCTCTT CTACGTGAGA GGCAGGAAGG TGCCCCACGT GCCCCAGGCC
  CAGATGCCCT GAACGGCACA AAGTTGGTAA TCGGTAAAGA TTAGAGAATG AATGAGCCGA
  R
  CCTTTGTATA GACAACCCAA CCGACAGGGG GAAACTTCTG GACACACACA TTACATGCAG
  AACCACCACT CACCTGGAGC TTCTGGGCAC TAAAAACGGG TGCATGGGTA ACGTTTTTGG
  CATTTAGCAA GCCTTTGACC TACTAGGGCA GATGCACCGG GGAAATAAAT GAGAGACGAG
  CATAACGGGC TATAAGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12771181	AF040754_AN1151_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8273909					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55593770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5671	CpG island 5671	within coordinates
Grk6	G protein-coupled receptor kinase 6	within coordinates
Rr281448	regulatory region 281448	within coordinates
Rr403797	regulatory region 403797	797 bp downstream
Rr403798	regulatory region 403798	1555 bp upstream
Tssr119959	transcription start site region 119959	583 bp downstream
Tssr122699	transcription start site region 122699	1061 bp upstream
Tssr122700	transcription start site region 122700	1659 bp downstream