rs8273911 SNP Detail

Summary

• ID
  rs8273911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55593912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCCTGA ACGGCACAAA
  GTTGGTAATC GGTAAAGATT AGAGAATGAA TGAGCCGAGC CTTTGTATAG ACAACCCAAC
  CGACAGGGGG AAACTTCTGG ACACACACAT TACATGCAGA ACCACCACTC ACCTGGAGCT
  TCTGGGCACT AAAAACGGGT GCATGGGTAA CGTTTTTGGC ATTTAGCAAG CCTTTGACCT
  R
  CTAGGGCAGA TGCACCGGGG AAATAAATGA GAGACGAGCA TAACGGGCTA TAAGGACTGT
  AGGGCTAAAA GCCAGTCTGG TCGACTTAGT GTGTGCGCGC ACATGGATAT GGTGCGGAGT
  TGCTCTTCCT TGGTTTCACT CCAGATGTTA TTTGGCTCTA TGGGTCCTAG ATGACTAGAG
  CCAGACAAAC GACATAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12771183	AF040754_AN1151_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8273911					SNP	A	A	A	A	A	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55593912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5671	CpG island 5671	within coordinates
Grk6	G protein-coupled receptor kinase 6	within coordinates
Rr281448	regulatory region 281448	within coordinates
Rr403797	regulatory region 403797	939 bp downstream
Rr403798	regulatory region 403798	1413 bp upstream
Tssr119959	transcription start site region 119959	725 bp downstream
Tssr122699	transcription start site region 122699	1203 bp upstream
Tssr122700	transcription start site region 122700	1517 bp downstream