rs8274771 SNP Detail

Summary

• ID
  rs8274771
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31403214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                            TCTCCTG
  GCACACCAGG GGTCCTCCAC TGTCTCCCTG CAGAGTCAAN AGANGCAAAG GTCAAGAGGC
  TGGGACAGCT ATACTGTCCN GGCTGCACAG ACTTTCCATG TCACATCACN GGAGAACCAT
  GTGCACACCT CTCCCTGTAT NNTTCTAGAA TGGACTCAAG ACATGGCTCC TTGACCATAT
  GGGAACGCTT CCCTCTGGCT ATGTCTGCCT TCAGATCCCA AACACTACAC TTTTANGTCA
  AAGGTGGCCT GCGTAGCCCA CTGAGCTGGA AGAGAGGGAG TCTGCCTGAG CCAGATCTAA
  M
  TCACTGTGTC CAACGGCAGT ACTGAGTCTC ATTCACTGTG GATTTTGCAA GCCNGGGTTC
  ATCAGCTCAN AGCCCCCTTT CCCACTCAGA ATCAGGCTGG AGAGATGAGG GGAGGCCACA
  TCCTGTGTGC CCTGAAAGAC TGGGAACCTG GGTAAACACA GGCTGGGCCA CCAAGAAAGC
  CAGGGGATAT CTTAAGCAAA TCTCTTCCTT GTGCCATGTA AATTTGTTTT TCACGGGGAA
  ACTGGCAGGG GCCTGTCCCA T                                          
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772064	Tmprss3_JC8191_8	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274771					SNP	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31403214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tmprss3	transmembrane protease, serine 3			Intron
				Noncoding-Transcript-Variant
Tssr5079	transcription start site region 5079			1981 bp downstream