rs8274773 SNP Detail

Summary

• ID
  rs8274773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31403284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                 TCTCCTG GCACACCAGG
  GGTCCTCCAC TGTCTCCCTG CAGAGTCAAN AGANGCAAAG GTCAAGAGGC TGGGACAGCT
  ATACTGTCCN GGCTGCACAG ACTTTCCATG TCACATCACN GGAGAACCAT GTGCACACCT
  CTCCCTGTAT NNTTCTAGAA TGGACTCAAG ACATGGCTCC TTGACCATAT GGGAACGCTT
  CCCTCTGGCT ATGTCTGCCT TCAGATCCCA AACACTACAC TTTTANGTCA AAGGTGGCCT
  GCGTAGCCCA CTGAGCTGGA AGAGAGGGAG TCTGCCTGAG CCAGATCTAA NTCACTGTGT
  CCAACGGCAG TACTGAGTCT CATTCACTGT GGATTTTGCA AGCCNGGGTT CATCAGCTCA
  Y
  AGCCCCCTTT CCCACTCAGA ATCAGGCTGG AGAGATGAGG GGAGGCCACA TCCTGTGTGC
  CCTGAAAGAC TGGGAACCTG GGTAAACACA GGCTGGGCCA CCAAGAAAGC CAGGGGATAT
  CTTAAGCAAA TCTCTTCCTT GTGCCATGTA AATTTGTTTT TCACGGGGAA ACTGGCAGGG
  GCCTGTCCCA T                                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772066	Tmprss3_JC8191_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274773					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31403284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tmprss3	transmembrane protease, serine 3			Intron
				Noncoding-Transcript-Variant
Tssr5079	transcription start site region 5079			1911 bp downstream