rs8274781 SNP Detail

Summary

• ID
  rs8274781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                GTG
  GGCCCTGAAC CTGTGGCTTT GCCATTGACT NGGGAACCTT GANGGTATTC AAGGGNATGG
  Y
  TGTGAGCTAG CCCNGATGAT GCTGGNAAAC TCATGAAAAN TACAAGGACC TATCAACAAC
  TTGAAGAAGG NGACATCAGA GCAACTCCAG AGTCAGATCA GCCNGTCAGC CTTGAAGTCA
  AGGATGAGGC CGTGAACCCA GGAGTGTGGG AGCAAAGGTA AAGGGACAAC AGCTGTCACC
  GTCCCCAGAG ACAACTGAGG AGCCAGCCTA CAGNACNAGT GACCCCTGAG GCTGGAAGGT
  AACAAACAAA GTGGgTGTGA GCTAGCCCNG ATGATGCTGG NAAACTCATG AAAANTACAA
  GGACCTATCA ACAACTTGAA GAAGGNGACA TCAGAGCAAC TCCAGAGTCA GATCAGCCNG
  TCAGCCTTGA AGTCAAGGAT GAGGCCGTGA ACCCAGGAGT GTGGGAGCAA AGGTAAAGGG
  ACAACAGCTG TCACCGTCCC CAGAGACAAC TGAGGAGCCA GCCTACAGNA CNAGTGACCC
  CTGAGGCTGG AAGGTAACAA ACAAAGTGGg TCTAGA                          
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772074	Tmprss3_JC8193_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274781					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404075 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	1120 bp downstream
Tssr5080	transcription start site region 5080	1519 bp downstream