rs8274782 SNP Detail

Summary

• ID
  rs8274782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                 GTGGGCC CTGAACCTGT
  GGCTTTGCCA TTGACTNGGG AACCTTGANG GTATTCAAGG GNATGGNTGT GAGCTAGCCC
  R
  GATGATGCTG GNAAACTCAT GAAAANTACA AGGACCTATC AACAACTTGA AGAAGGNGAC
  ATCAGAGCAA CTCCAGAGTC AGATCAGCCN GTCAGCCTTG AAGTCAAGGA TGAGGCCGTG
  AACCCAGGAG TGTGGGAGCA AAGGTAAAGG GACAACAGCT GTCACCGTCC CCAGAGACAA
  CTGAGGAGCC AGCCTACAGN ACNAGTGACC CCTGAGGCTG GAAGGTAACA AACAAAGTGG
  gcattgaatc ctggagtttg agaggctgag gcaggaggct tgtggtgagg ttcatgcggt
  cagcctgggc tgcagtgaga gcctgcacna acacntctcc aaaggcnaac cctgAGCTTC
  TCTCATGGGT TGACTATAAC CTCCTTCTTA TTTGCCTGCC TGCAACCNAG ACACNTGATC
  TTGCTTGGAG CAGAAGCTGC TAAAGTATGG ATCACGTACC ATGTGGAGGC TGGGTTACCT
  TGCATTTAGG GCAGGCTCTA GA                                         
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772075	Tmprss3_JC8193_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274782					SNP	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404089 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	1106 bp downstream
Tssr5080	transcription start site region 5080	1505 bp downstream