rs8274783 SNP Detail

Summary

• ID
  rs8274783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                    GTG GGCCCTGAAC CTGTGGCTTT GCCATTGACT NGGGAACCTT
  GANGGTATTC AAGGGNATGG NTGTGAGCTA GCCCNGATGA TGCTGGNAAA CTCATGAAAA
  Y
  TACAAGGACC TATCAACAAC TTGAAGAAGG NGACATCAGA GCAACTCCAG AGTCAGATCA
  GCCNGTCAGC CTTGAAGTCA AGGATGAGGC CGTGAACCCA GGAGTGTGGG AGCAAAGGTA
  AAGGGACAAC AGCTGTCACC GTCCCCAGAG ACAACTGAGG AGCCAGCCTA CAGNACNAGT
  GACCCCTGAG GCTGGAAGGT AACAAACAAA GTGGgcattg aatcctggag tttgagaggc
  tgaggcagga ggcttgtggt gaggttcatg cggtcagcct gggctgcagt gagagcctgc
  acnaacacnt ctccaaaggc naaccctgAG CTTCTCTCAT GGGTTGACTA TAACCTCCTT
  CTTATTTGCC TGCCTGCAAC CNAGACACNT GATCTTGCTT GGAGCAGAAG CTGCTAAAGT
  ATGGATCACG TACCATGTGG AGGCTGGGTT ACCTTGCATT TAGGGCAGGC TCTAGA    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss12772076	Tmprss3_JC8193_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T				C
ss24751046	Tmprss3_JC8193_11	ROCHEBIO	RPAMM	r	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs8274783					SNP	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404115 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	1080 bp downstream
Tssr5080	transcription start site region 5080	1479 bp downstream