rs8274784 SNP Detail

Summary

• ID
  rs8274784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                    GTGG GCCCTGAACC
  TGTGGCTTTG CCATTGACTN GGGAACCTTG ANGGTATTCA AGGGNATGGN TGTGAGCTAG
  CCCNGATGAT GCTGGNAAAC TCATGAAAAN TACAAGGACC TATCAACAAC TTGAAGAAGG
  Y
  GACATCAGAG CAACTCCAGA GTCAGATCAG CCNGTCAGCC TTGAAGTCAA GGATGAGGCC
  GTGAACCCAG GAGTGTGGGA GCAAAGGTAA AGGGACAACA GCTGTCACCG TCCCCAGAGA
  CAACTGAGGA GCCAGCCTAC AGNACNAGTG ACCCCTGAGG CTGGAAGGTA ACAAACAAAG
  TGGgcattga atcctggagt ttgagaggct gaggcaggag gcttgtggtg aggttcatgc
  ggtcagcctg ggctgcagtg agagcctgca cnaacacntc tccaaaggcn aaccctgAGC
  TTCTCTCATG GGTTGACTAT AACCTCCTTC TTATTTGCCT GCCTGCAACC NAGACACNTG
  ATCTTGCTTG GAGCAGAAGC TGCTAAAGTA TGGATCACGT ACCATGTGGA GGCTGGGTTA
  CCTTGCATTT AGGGCAGGCT CTAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772077	Tmprss3_JC8193_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274784					SNP	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404146 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	1049 bp downstream
Tssr5080	transcription start site region 5080	1448 bp downstream