rs8274785 SNP Detail

Summary

• ID
  rs8274785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                           GTGGGCC CTGAACCTGT GGCTTTGCCA TTGACTNGGG
  AACCTTGANG GTATTCAAGG GNATGGNTGT GAGCTAGCCC NGATGATGCT GGNAAACTCA
  TGAAAANTAC AAGGACCTAT CAACAACTTG AAGAAGGNGA CATCAGAGCA ACTCCAGAGT
  CAGATCAGCC NGTCAGCCTT GAAGTCAAGG ATGAGGCCGT GAACCCAGGA GTGTGGGAGC
  AAAGGTAAAG GGACAACAGC TGTCACCGTC CCCAGAGACA ACTGAGGAGC CAGCCTACAG
  Y
  ACNAGTGACC CCTGAGGCTG GAAGGTAACA AACAAAGTGG gcattgaatc ctggagtttg
  agaggctgag gcaggaggct tgtggtgagg ttcatgcggt cagcctgggc tgcagtgaga
  gcctgcacna acacntctcc aaaggcnaac cctgAGCTTC TCTCATGGGT TGACTATAAC
  CTCCTTCTTA TTTGCCTGCC TGCAACCNAG ACACNTGATC TTGCTTGGAG CAGAAGCTGC
  TAAAGTATGG ATCACGTACC ATGTGGAGGC TGGGTTACCT TGCATTTAGG GCAGGCTCTA
  GA                                                               
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772078	Tmprss3_JC8193_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274785					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404289 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	906 bp downstream
Tssr5080	transcription start site region 5080	1305 bp downstream