rs8274786 SNP Detail

Summary

• ID
  rs8274786
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGTCCCTCC AAATACAGGT GTGGGCCCTG AACCTGTGGC TTTGCCATTG ACTAGGGAAC
  CTTGAAGGTA TTCAAGGGTA TGGTTGTGAG CTAGCCCAGA TGATGCTGGT AAACTCATGA
  AAATTACAAG GACCTATCAA CAACTTGAAG AAGGTGACAT CAGAGCAACT CCAGAGTCAG
  ATCAGCCTGT CAGCCTTGAA GTCAAGGATG AGGCCGTGAA CCCAGGAGTG TGGGAGCAAA
  GGTAAAGGGA CAACAGCTGT CACCGTCCCC AGAGACAACT GAGGAGCCAG CCTACAGCAC
  W
  AGTGACCCCT GAGGCTGGAA GGTAACAAAC AAAGTGGGCA TTGAATCCTG GAGTTTGAGA
  GGCTGAGGCA GGAGGCTTGT GGTGAGGTTC ATGCGGTCAG CCTGGGCTGC AGTGAGAGCC
  TGCACGAACA CGTCTCCAAA GGCGAACCCT GAGCTTCTCT CATGGGTTGA CTATAACCTC
  CTTCTTATTT GCCTGCCTGC AACCAAGACA CGTGATCTTG CTTGGAGCAG AAGCTGCTAA
  AGTATGGATC ACGTACCATG TGGAGGCTGG GTTACCTTGC ATTTAGGGCA GGCTCTAGAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss12772079	Tmprss3_JC8193_6	ROCHEBIO	RPAMM	f	SNP	T		T	T	T		A		A
ss39558238	mCV24387647	ABI	CRAMUS_MOUSE	f	SNP		T				A		T
ss145457850	ENSMUSSNP5270630	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs8274786					SNP	T	T	T	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss144591503	ENSMUSSNP3324272	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404292 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	903 bp downstream
Tssr5080	transcription start site region 5080	1302 bp downstream