rs8274787 SNP Detail

Summary

• ID
  rs8274787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

          GT GGGCCCTGAA CCTGTGGCTT TGCCATTGAC TNGGGAACCT TGANGGTATT
  CAAGGGNATG GNTGTGAGCT AGCCCNGATG ATGCTGGNAA ACTCATGAAA ANTACAAGGA
  CCTATCAACA ACTTGAAGAA GGNGACATCA GAGCAACTCC AGAGTCAGAT CAGCCNGTCA
  GCCTTGAAGT CAAGGATGAG GCCGTGAACC CAGGAGTGTG GGAGCAAAGG TAAAGGGACA
  ACAGCTGTCA CCGTCCCCAG AGACAACTGA GGAGCCAGCC TACAGNACNA GTGACCCCTG
  AGGCTGGAAG GTAACAAACA AAGTGGgcat tgaatcctgg agtttgagag gctgaggcag
  gaggcttgtg gtgaggttca tgcggtcagc ctgggctgca gtgagagcct gcacnaacac
  R
  tctccaaagg cnaaccctgA GCTTCTCTCA TGGGTTGACT ATAACCTCCT TCTTATTTGC
  CTGCCTGCAA CCNAGACACN TGATCTTGCT TGGAGCAGAA GCTGCTAAAG TATGGATCAC
  GTACCATGTG GAGGCTGGGT TACCTTGCAT TTAGGGCAGG CTCTAGA              
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772080	Tmprss3_JC8193_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274787					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404424 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr525395	regulatory region 525395			1889 bp proximal
Tmprss3	transmembrane protease, serine 3			Intron
				Noncoding-Transcript-Variant
Tssr5079	transcription start site region 5079			771 bp downstream
Tssr5080	transcription start site region 5080			1170 bp downstream