rs8274788 SNP Detail

Summary

• ID
  rs8274788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                               GTGG
  GCCCTGAACC TGTGGCTTTG CCATTGACTN GGGAACCTTG ANGGTATTCA AGGGNATGGN
  TGTGAGCTAG CCCNGATGAT GCTGGNAAAC TCATGAAAAN TACAAGGACC TATCAACAAC
  TTGAAGAAGG NGACATCAGA GCAACTCCAG AGTCAGATCA GCCNGTCAGC CTTGAAGTCA
  AGGATGAGGC CGTGAACCCA GGAGTGTGGG AGCAAAGGTA AAGGGACAAC AGCTGTCACC
  GTCCCCAGAG ACAACTGAGG AGCCAGCCTA CAGNACNAGT GACCCCTGAG GCTGGAAGGT
  AACAAACAAA GTGGgcattg aatcctggag tttgagaggc tgaggcagga ggcttgtggt
  gaggttcatg cggtcagcct gggctgcagt gagagcctgc acnaacacnt ctccaaaggc
  R
  aaccctgAGC TTCTCTCATG GGTTGACTAT AACCTCCTTC TTATTTGCCT GCCTGCAACC
  NAGACACNTG ATCTTGCTTG GAGCAGAAGC TGCTAAAGTA TGGATCACGT ACCATGTGGA
  GGCTGGGTTA CCTTGCATTT AGGGCAGGCT CTAGA                           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772081	Tmprss3_JC8193_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274788					SNP	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404436 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	1877 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	759 bp downstream
Tssr5080	transcription start site region 5080	1158 bp downstream