rs8274789 SNP Detail

Summary

• ID
  rs8274789
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                              GTGGG
  CCCTGAACCT GTGGCTTTGC CATTGACTNG GGAACCTTGA NGGTATTCAA GGGNATGGNT
  GTGAGCTAGC CCNGATGATG CTGGNAAACT CATGAAAANT ACAAGGACCT ATCAACAACT
  TGAAGAAGGN GACATCAGAG CAACTCCAGA GTCAGATCAG CCNGTCAGCC TTGAAGTCAA
  GGATGAGGCC GTGAACCCAG GAGTGTGGGA GCAAAGGTAA AGGGACAACA GCTGTCACCG
  TCCCCAGAGA CAACTGAGGA GCCAGCCTAC AGNACNAGTG ACCCCTGAGG CTGGAAGGTA
  ACAAACAAAG TGGgcattga atcctggagt ttgagaggct gaggcaggag gcttgtggtg
  aggttcatgc ggtcagcctg ggctgcagtg agagcctgca cnaacacntc tccaaaggcn
  aaccctgAGC TTCTCTCATG GGTTGACTAT AACCTCCTTC TTATTTGCCT GCCTGCAACC
  W
  AGACACNTGA TCTTGCTTGG AGCAGAAGCT GCTAAAGTAT GGATCACGTA CCATGTGGAG
  GCTGGGTTAC CTTGCATTTA GGGCAGGCTC TAGA                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772082	Tmprss3_JC8193_9	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274789					SNP	A	A	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404497 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	1816 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	698 bp downstream
Tssr5080	transcription start site region 5080	1097 bp downstream