rs8274790 SNP Detail

Summary

• ID
  rs8274790
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                      GT GGGCCCTGAA
  CCTGTGGCTT TGCCATTGAC TNGGGAACCT TGANGGTATT CAAGGGNATG GNTGTGAGCT
  AGCCCNGATG ATGCTGGNAA ACTCATGAAA ANTACAAGGA CCTATCAACA ACTTGAAGAA
  GGNGACATCA GAGCAACTCC AGAGTCAGAT CAGCCNGTCA GCCTTGAAGT CAAGGATGAG
  GCCGTGAACC CAGGAGTGTG GGAGCAAAGG TAAAGGGACA ACAGCTGTCA CCGTCCCCAG
  AGACAACTGA GGAGCCAGCC TACAGNACNA GTGACCCCTG AGGCTGGAAG GTAACAAACA
  AAGTGGgcat tgaatcctgg agtttgagag gctgaggcag gaggcttgtg gtgaggttca
  tgcggtcagc ctgggctgca gtgagagcct gcacnaacac ntctccaaag gcnaaccctg
  AGCTTCTCTC ATGGGTTGAC TATAACCTCC TTCTTATTTG CCTGCCTGCA ACCNAGACAC
  K
  TGATCTTGCT TGGAGCAGAA GCTGCTAAAG TATGGATCAC GTACCATGTG GAGGCTGGGT
  TACCTTGCAT TTAGGGCAGG CTCTAGA                                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772083	Tmprss3_JC8193_10	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274790					SNP	G	G	G	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404504 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	1809 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	691 bp downstream
Tssr5080	transcription start site region 5080	1090 bp downstream