rs8274799 SNP Detail

Summary

• ID
  rs8274799
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31405526 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                 GATGAGT GGGCGTGGCT
  TNTGNTCTGA GCTAGCTCCA TAACCAAGGC CCAACCACTT CCTAGAGGGT GGGTTTAGAG
  ACCTGAACAC GAGGTCAGTT GATTTCTGGG GCAGTGGCTT CAGGAACTTC ACCTCATTGT
  GCCNCTTCTA ACAGAGACCA TNCAGCCCAT CTGTCTGCCC AACTCTGAAG AGAACTTTCC
  S
  GATGGGAAAC TGTGCTGGAC CTCAGGATGG GGAGCCACAG AGGATGGAGG TCAGTGGTCT
  GAAGCCTGAG ACAGGGAGGN NCCCTCGGGA TGCTTGGATG TCCCAGNTCA GGGTTGGGGC
  AGGCCAACTG TTCACAACAG CCATCTGCTG AATAGCCGTG GGTCACCATG GTGCCACTCC
  TCTTTGGACA GTGTGACGTT TTGAGGTTTC ATGAAGAAAT GAGCTATAGN GGAGAAGTGT
  GGGTACTTCT CCATGGTGAG GCCTCCACCC AACCCTCNTT CCTGCCCCTT CTTACTCTAC
  TGAAGCAAGT GTCTGAAGCA CACCTTGATG AGCCTCAAGC TTNTACCAAG NAGTACAAGA
  TGACGAAGTC TTGTCTGAGA A                                          
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772092	Tmprss3_JC8195_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274799					SNP	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31405526 () rs orientation: reverse

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	294 bp upstream
Tssr5080	transcription start site region 5080	68 bp downstream