rs8274801 SNP Detail

Summary

• ID
  rs8274801
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31405445 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                          GATGAGTG GGCGTGGCTT NTGNTCTGAG CTAGCTCCAT
  AACCAAGGCC CAACCACTTC CTAGAGGGTG GGTTTAGAGA CCTGAACACG AGGTCAGTTG
  ATTTCTGGGG CAGTGGCTTC AGGAACTTCA CCTCATTGTG CCNCTTCTAA CAGAGACCAT
  NCAGCCCATC TGTCTGCCCA ACTCTGAAGA GAACTTTCCN GATGGGAAAC TGTGCTGGAC
  CTCAGGATGG GGAGCCACAG AGGATGGAGG TCAGTGGTCT GAAGCCTGAG ACAGGGAGGN
  M
  CCCTCGGGAT GCTTGGATGT CCCAGNTCAG GGTTGGGGCA GGCCAACTGT TCACAACAGC
  CATCTGCTGA ATAGCCGTGG GTCACCATGG TGCCACTCCT CTTTGGACAG TGTGACGTTT
  TGAGGTTTCA TGAAGAAATG AGCTATAGNG GAGAAGTGTG GGTACTTCTC CATGGTGAGG
  CCTCCACCCA ACCCTCNTTC CTGCCCCTTC TTACTCTACT GAAGCAAGTG TCTGAAGCAC
  ACCTTGATGA GCCTCAAGCT TNTACCAAGN AGTACAAGAT GACGAAGTCT TGTCTGAGAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772094	Tmprss3_JC8195_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274801					SNP	C	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31405445 () rs orientation: reverse

Symbol	Name	Function Class
Rr525395	regulatory region 525395	868 bp proximal
Rr525396	regulatory region 525396	1129 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	213 bp upstream
Tssr5080	transcription start site region 5080	149 bp downstream