rs8274808 SNP Detail

Summary

• ID
  rs8274808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31405989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGAGTNCA GNGCCCNGCA GCCAAGCCNG TCTNTAAAAG GCNGGACAGT TGGANAGAAG
  ACAGTTCAGG CTTGTGAGCT ATGNGGACCT CATCACGGTT GCTGGAACCG CAGGAGACAT
  ACACAAAGGG GCTGATGGAT TTATGACAAG ATTTTACTCG CTCAAATGTG CATTGGGTCA
  CACGTGGCTG GCCCTTGGGC CACAGTTGAT CACTCCTGGA CCAGACGTTA AGTGTTNGTG
  R
  TGACAGCCGG CCTGCATCTA GGCTNTGCNG CTGATGCTCT AGCAAAGNCA AGCAGCTGCN
  TGTNCCCAGG GCTTCTGTGT GAGCAGCACC TGAGATGCAC CCCCTCCTCC CCATCCTGCA
  TGGTAATCAT GGAAAAGTGG AGAAGGATAG AGACATATTT AACTATTTAA CTCTTTAGCC
  AAGTATGCTA CAGACAACTC CCTTTCTAGA ATCAAATATC ACCAACAATA ATTAGCAAGT
  AACCCCCACC CCCCACTTAA GCAGCTTTTC TGTTGCCCTT GAAATCACAC AGGTTTGCTG
  CCAAAA                                                           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772101	Tmprss3_JC8196_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274808					SNP	G	G	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31405989 () rs orientation: forward

Symbol	Name	Function Class
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	757 bp upstream
Tssr5080	transcription start site region 5080	359 bp upstream