rs8274810 SNP Detail

Summary

• ID
  rs8274810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31406018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGAGTNC AGNGCCCNGC AGCCAAGCCN
  GTCTNTAAAA GGCNGGACAG TTGGANAGAA GACAGTTCAG GCTTGTGAGC TATGNGGACC
  TCATCACGGT TGCTGGAACC GCAGGAGACA TACACAAAGG GGCTGATGGA TTTATGACAA
  GATTTTACTC GCTCAAATGT GCATTGGGTC ACACGTGGCT GGCCCTTGGG CCACAGTTGA
  TCACTCCTGG ACCAGACGTT AAGTGTTNGT GNTGACAGCC GGCCTGCATC TAGGCTNTGC
  Y
  GCTGATGCTC TAGCAAAGNC AAGCAGCTGC NTGTNCCCAG GGCTTCTGTG TGAGCAGCAC
  CTGAGATGCA CCCCCTCCTC CCCATCCTGC ATGGTAATCA TGGAAAAGTG GAGAAGGATA
  GAGACATATT TAACTATTTA ACTCTTTAGC CAAGTATGCT ACAGACAACT CCCTTTCTAG
  AATCAAATAT CACCAACAAT AATTAGCAAG TAACCCCCAC CCCCCACTTA AGCAGCTTTT
  CTGTTGCCCT TGAAATCACA CAGGTTTGCT GCCAAAA                         
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772103	Tmprss3_JC8196_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274810					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31406018 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	295 bp proximal
Rr525396	regulatory region 525396	556 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	786 bp upstream
Tssr5080	transcription start site region 5080	388 bp upstream