rs8274813 SNP Detail

Summary

• ID
  rs8274813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31406053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                               CAGG
  AGTNCAGNGC CCNGCAGCCA AGCCNGTCTN TAAAAGGCNG GACAGTTGGA NAGAAGACAG
  TTCAGGCTTG TGAGCTATGN GGACCTCATC ACGGTTGCTG GAACCGCAGG AGACATACAC
  AAAGGGGCTG ATGGATTTAT GACAAGATTT TACTCGCTCA AATGTGCATT GGGTCACACG
  TGGCTGGCCC TTGGGCCACA GTTGATCACT CCTGGACCAG ACGTTAAGTG TTNGTGNTGA
  CAGCCGGCCT GCATCTAGGC TNTGCNGCTG ATGCTCTAGC AAAGNCAAGC AGCTGCNTGT
  R
  CCCAGGGCTT CTGTGTGAGC AGCACCTGAG ATGCACCCCC TCCTCCCCAT CCTGCATGGT
  AATCATGGAA AAGTGGAGAA GGATAGAGAC ATATTTAACT ATTTAACTCT TTAGCCAAGT
  ATGCTACAGA CAACTCCCTT TCTAGAATCA AATATCACCA ACAATAATTA GCAAGTAACC
  CCCACCCCCC ACTTAAGCAG CTTTTCTGTT GCCCTTGAAA TCACACAGGT TTGCTGCCAA
  AA                                                               
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772106	Tmprss3_JC8196_8	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274813					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31406053 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	260 bp proximal
Rr525396	regulatory region 525396	521 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	821 bp upstream
Tssr5080	transcription start site region 5080	423 bp upstream