rs8274927 SNP Detail

Summary

• ID
  rs8274927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC ACAGGTTAGT GGGGCACGGC
  Y
  GGCTGGCTTT GCTGGATAGC AGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	SM/J	SPRET/EiJ
ss12772220	Tmprss4_JC8209_1	ROCHEBIO	RPAMM	f	SNP			T	C	C	C	T	C			T
ss136406313	ENSMUSSNP4178119	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322942031	CHEV_9_44988938	CHEVERUD	SCREENING_POP	f	SNP									C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	LG/J	SM/J	SPRET/EiJ
rs8274927					SNP	C	C	T	C	C	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092153 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1597 bp upstream
Rr677858	regulatory region 677858			876 bp proximal
Rr677859	regulatory region 677859			1609 bp proximal
Smim35	small integral membrane protein 35			1152 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant