rs8274928 SNP Detail

Summary

• ID
  rs8274928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTCCTGT GACTTGAGCA
  ACAGGGAGGT TCTGATCTGG ACGGATCTCC ACTGCTCTGA AAGCGGGCTG GCTGTGGTAG
  GAAGAGTGAA CTGTGAGCTG GGGCAGAGGA TGAATTACAT GGCAGAAAGA GCCCCTGCTC
  CCAGAGGAGG GGGCACAGGT TAGTGGGGCA CGGCTGGCTG GCTTTGCTGG ATAGCAGGAA
  Y
  AGTCCCCACA TCAAGGCAGG CTGCCGTGGC CTCGCTTTCC TGGGCAGGGA CTCCTGGCCC
  AGAAGTGGAG CTCTGCAGAG GACTAGGGGC CTGCTTTCCT CACACCCAGC TCTGTCCCTG
  TCTCAGATGT CCCAGTATCT CGTTAGGGTC ACATCAGCAG GAGCAAAGAA GCAAGGGGAC
  CCAGATGAAC TCCTGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772221	Tmprss4_JC8209_2	ROCHEBIO	RPAMM	f	SNP	C				T	T	T	T	T	C								C
ss61388776	NES16766264	PERLEGEN	MM_PANEL2	f	SNP		C	T	T		T		T			T	T	C	C	T	T	C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8274928					SNP	C	C	T	T	T	T	T	T	T	C	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388776	NES16766264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1571 bp upstream
Rr677858	regulatory region 677858			850 bp proximal
Rr677859	regulatory region 677859			1583 bp proximal
Smim35	small integral membrane protein 35			1126 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant