rs8274929 SNP Detail

Summary

• ID
  rs8274929
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGTTAGT GGGGCACGGC
  TGGCTGGCTT TGCTGGATAG CAGGAATAGT CCCCACATCA AGGCAGGCTG CCGTGGCCTC
  GCTTTCCTGG GCAGGGACTC CTGGCCCAGA AGTGGAGCTC TGCAGAGGAC TAGGGGCCTG
  CTTTCCTCAC ACCCAGCTCT GTCCCTGTCT CAGATGTCCC AGTATCTCGT TAGGGTCACA
  W
  CAGCAGGAGC AAAGAAGCAA GGGGACCCAG ATGAACTCCT GTCTCAGCAC AGAGGGAACT
  GGAGTGTGGA CATTTGGTTT TCCATATAAG GGGCCTGGAG ACAGGAGAAG CCTGGATCAA
  TTCTTATAAG AGTCTGGATG GAACTTCCTG AAACTTGGAC CGCCCTCTCC CTTCCTTTCT
  GCTAATCCAT GTTTGTCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772222	Tmprss4_JC8209_3	ROCHEBIO	RPAMM	f	SNP	A				T	T	T		T	T	T								T
ss61388774	NES16766266	PERLEGEN	MM_PANEL2	f	SNP		A		T	T		T	A	T		T	T	T	A	A	T	T	A		T
ss136406316	ENSMUSSNP6255231	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	T								T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8274929					SNP	A	A	A	T	T	T	T	A	T	T	T	T	T	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388774	NES16766266	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1417 bp upstream
Rr677858	regulatory region 677858			696 bp proximal
Rr677859	regulatory region 677859			1429 bp proximal
Smim35	small integral membrane protein 35			972 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant