rs8274933 SNP Detail

Summary

• ID
  rs8274933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAGTGG AGCTCTGCAG
  AGGACTAGGG GCCTGCTTTC CTCACACCCA GCTCTGTCCC TGTCTCAGAT GTCCCAGTAT
  CTCGTTAGGG TCACATCAGC AGGAGCAAAG AAGCAAGGGG ACCCAGATGA ACTCCTGTCT
  CAGCACAGAG GGAACTGGAG TGTGGACATT TGGTTTTCCA TATAAGGGGC CTGGAGACAG
  R
  AGAAGCCTGG ATCAATTCTT ATAAGAGTCT GGATGGAACT TCCTGAAACT TGGACCGCCC
  TCTCCCTTCC TTTCTGCTAA TCCATGTTTG TCTTCTTTCA AACTCCATAT TCAAGTCTTC
  CTCCTCCAGG AAGCCTTCCT TAACTATTCT GTTCTCTGGC TCTTTCTTCA CTAAATTTTC
  GTCTTTTGGA TTTCCCCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772226	Tmprss4_JC8209_7	ROCHEBIO	RPAMM	f	SNP	A			G	G	G	G	G	G							G
ss61388772	NES16766268	PERLEGEN	MM_PANEL2	f	SNP		A	G	G		G	G			G	G	A	G	G	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8274933					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388772	NES16766268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1312 bp upstream
Rr677858	regulatory region 677858			591 bp proximal
Rr677859	regulatory region 677859			1324 bp proximal
Smim35	small integral membrane protein 35			867 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant