rs8274936 SNP Detail

Summary

• ID
  rs8274936
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGCTTTC CTCACACCCA
  GCTCTGTCCC TGTCTCAGAT GTCCCAGTAT CTCGTTAGGG TCACATCAGC AGGAGCAAAG
  AAGCAAGGGG ACCCAGATGA ACTCCTGTCT CAGCACAGAG GGAACTGGAG TGTGGACATT
  TGGTTTTCCA TATAAGGGGC CTGGAGACAG GAGAAGCCTG GATCAATTCT TATAAGAGTC
  W
  GGATGGAACT TCCTGAAACT TGGACCGCCC TCTCCCTTCC TTTCTGCTAA TCCATGTTTG
  TCTTCTTTCA AACTCCATAT TCAAGTCTTC CTCCTCCAGG AAGCCTTCCT TAACTATTCT
  GTTCTCTGGC TCTTTCTTCA CTAAATTTTC GTCTTTTGGA TTTCCCCCTT CTTCTCCAGT
  CTGTCCTCTC AGGTCAAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772229	Tmprss4_JC8209_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274936					SNP	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092468 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1282 bp upstream
Rr677858	regulatory region 677858			561 bp proximal
Rr677859	regulatory region 677859			1294 bp proximal
Smim35	small integral membrane protein 35			837 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant