rs8274937 SNP Detail

Summary

• ID
  rs8274937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC ATGTTTGTCT TCTTTCAAAC
  Y
  CCATATTCAA GTCTTCCTCC TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12772230	Tmprss4_JC8209_11	ROCHEBIO	RPAMM	f	SNP	C			C		C	T	C	C	C	T	T										C
ss24757673	Tmprss4_JC8209_12	ROCHEBIO	RPAMM	f	SNP	C			C		C	T	C	C	C	T	T					C				C	C
ss61388770	NES16766270	PERLEGEN	MM_PANEL2	f	SNP		C			C	C		C		C		T	C	C	C			C	C	T			C
ss136406322	ENSMUSSNP5161493	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C								C
ss322942032	CHEV_9_44989327	CHEVERUD	SCREENING_POP	f	SNP																C					C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8274937					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388770	NES16766270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092542 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1208 bp upstream
Rr677858	regulatory region 677858			487 bp proximal
Rr677859	regulatory region 677859			1220 bp proximal
Smim35	small integral membrane protein 35			763 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant