rs8274939 SNP Detail

Summary

• ID
  rs8274939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAGCC TGCTGCATCT
  GGTCCAGCTG ACGCTGCAGT GGGCTGGACT GCAGTGGGGG AGGGGATGGC TGCAGGGGAA
  GTAGAGGACA GCAGGTACTG GGCATGCTGT CCTTGGAAAT GAGGTGACAG GTGTCCCTTT
  TCTAGACAGT GCTGGGAGTT CTCCTCCTCT GGAGGGAAGA GAGCAGGACC TTTACAAAGA
  R
  GGGTCAGAGG GACAGAGGTC ATATGGATTC ATTCTGGCTG CCCAGAACAT CTACTGTACA
  AAACCTTGAG GCTGCTTTAG GGATCTATGG GGAGAACTGT GATCGACAGG CAATGTCTGT
  CTGAGGCAGA CTGCTAGGGA GAGTGTGACC CCTGCCTGCA GCAGATCACC TGGGCTCCTT
  TCAGGTAGGC TCCTCGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772232	Tmprss4_JC8210_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8274939					SNP	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			321 bp upstream
Rr677858	regulatory region 677858			57 bp distal
Rr677859	regulatory region 677859			333 bp proximal
Smim35	small integral membrane protein 35			Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant