rs8274940 SNP Detail

Summary

• ID
  rs8274940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCCTGCT GCATCTGGTC
  CAGCTGACGC TGCAGTGGGC TGGACTGCAG TGGGGGAGGG GATGGCTGCA GGGGAAGTAG
  AGGACAGCAG GTACTGGGCA TGCTGTCCTT GGAAATGAGG TGACAGGTGT CCCTTTTCTA
  GACAGTGCTG GGAGTTCTCC TCCTCTGGAG GGAAGAGAGC AGGACCTTTA CAAAGAAGGG
  K
  CAGAGGGACA GAGGTCATAT GGATTCATTC TGGCTGCCCA GAACATCTAC TGTACAAAAC
  CTTGAGGCTG CTTTAGGGAT CTATGGGGAG AACTGTGATC GACAGGCAAT GTCTGTCTGA
  GGCAGACTGC TAGGGAGAGT GTGACCCCTG CCTGCAGCAG ATCACCTGGG CTCCTTTCAG
  GTAGGCTCCT CGAGGGATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	SPRET/EiJ
ss12772233	Tmprss4_JC8210_3	ROCHEBIO	RPAMM	f	SNP	G			T	T	T	T	T		G
ss136406343	ENSMUSSNP6650886	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	SPRET/EiJ
rs8274940					SNP	G	G	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			317 bp upstream
Rr677858	regulatory region 677858			61 bp distal
Rr677859	regulatory region 677859			329 bp proximal
Smim35	small integral membrane protein 35			Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant