rs8274941 SNP Detail

Summary

• ID
  rs8274941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCAGCT GACGCTGCAG
  TGGGCTGGAC TGCAGTGGGG GAGGGGATGG CTGCAGGGGA AGTAGAGGAC AGCAGGTACT
  GGGCATGCTG TCCTTGGAAA TGAGGTGACA GGTGTCCCTT TTCTAGACAG TGCTGGGAGT
  TCTCCTCCTC TGGAGGGAAG AGAGCAGGAC CTTTACAAAG AAGGGTCAGA GGGACAGAGG
  Y
  CATATGGATT CATTCTGGCT GCCCAGAACA TCTACTGTAC AAAACCTTGA GGCTGCTTTA
  GGGATCTATG GGGAGAACTG TGATCGACAG GCAATGTCTG TCTGAGGCAG ACTGCTAGGG
  AGAGTGTGAC CCCTGCCTGC AGCAGATCAC CTGGGCTCCT TTCAGGTAGG CTCCTCGAGG
  GATCAATTCT CACTCTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772234	Tmprss4_JC8210_4	ROCHEBIO	RPAMM	f	SNP	C				T	T	T		C								C
ss61388766	NES16766274	PERLEGEN	MM_PANEL2	f	SNP		C		T	T	T		T		T	T	C	C	T	T	C		T
ss136406346	ENSMUSSNP1064122	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	T						T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8274941					SNP	C	C	C	T	T	T	T	T	C	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388766	NES16766274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093448 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			302 bp upstream
Rr677858	regulatory region 677858			76 bp distal
Rr677859	regulatory region 677859			314 bp proximal
Smim35	small integral membrane protein 35			Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant