rs8274943 SNP Detail

Summary

• ID
  rs8274943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTACTGG GCATGCTGTC
  CTTGGAAATG AGGTGACAGG TGTCCCTTTT CTAGACAGTG CTGGGAGTTC TCCTCCTCTG
  GAGGGAAGAG AGCAGGACCT TTACAAAGAA GGGTCAGAGG GACAGAGGTC ATATGGATTC
  ATTCTGGCTG CCCAGAACAT CTACTGTACA AAACCTTGAG GCTGCTTTAG GGATCTATGG
  R
  GAGAACTGTG ATCGACAGGC AATGTCTGTC TGAGGCAGAC TGCTAGGGAG AGTGTGACCC
  CTGCCTGCAG CAGATCACCT GGGCTCCTTT CAGGTAGGCT CCTCGAGGGA TCAATTCTCA
  CTCTCCTTTC CTTCGCTGGT GAAGCCTTGT GAGTAGAGAG AATTCGATGT ACAAACAGAC
  CACTATGAGA ACTCATGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772236	Tmprss4_JC8210_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274943					SNP	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093520 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			230 bp upstream
Rr677858	regulatory region 677858			148 bp distal
Rr677859	regulatory region 677859			242 bp proximal
Smim35	small integral membrane protein 35			Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant