rs8274946 SNP Detail

Summary

• ID
  rs8274946
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTCCTC TGGAGGGAAG
  AGAGCAGGAC CTTTACAAAG AAGGGTCAGA GGGACAGAGG TCATATGGAT TCATTCTGGC
  TGCCCAGAAC ATCTACTGTA CAAAACCTTG AGGCTGCTTT AGGGATCTAT GGGGAGAACT
  GTGATCGACA GGCAATGTCT GTCTGAGGCA GACTGCTAGG GAGAGTGTGA CCCCTGCCTG
  M
  AGCAGATCAC CTGGGCTCCT TTCAGGTAGG CTCCTCGAGG GATCAATTCT CACTCTCCTT
  TCCTTCGCTG GTGAAGCCTT GTGAGTAGAG AGAATTCGAT GTACAAACAG ACCACTATGA
  GAACTCATGG TGTCCAGGAA TGGGTTAAAG CAGGTACAGA TTCTAACCTC TACCTCCCAG
  CTTCTGCCTG AGCAAGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772239	Tmprss4_JC8210_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8274946					SNP	C	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093588 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			162 bp upstream
Rr677858	regulatory region 677858			216 bp distal
Rr677859	regulatory region 677859			174 bp proximal
Smim35	small integral membrane protein 35			Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant