rs8274947 SNP Detail

Summary

• ID
  rs8274947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAAGAAG GGTCAGAGGG
  ACAGAGGTCA TATGGATTCA TTCTGGCTGC CCAGAACATC TACTGTACAA AACCTTGAGG
  CTGCTTTAGG GATCTATGGG GAGAACTGTG ATCGACAGGC AATGTCTGTC TGAGGCAGAC
  TGCTAGGGAG AGTGTGACCC CTGCCTGCAG CAGATCACCT GGGCTCCTTT CAGGTAGGCT
  Y
  CTCGAGGGAT CAATTCTCAC TCTCCTTTCC TTCGCTGGTG AAGCCTTGTG AGTAGAGAGA
  ATTCGATGTA CAAACAGACC ACTATGAGAA CTCATGGTGT CCAGGAATGG GTTAAAGCAG
  GTACAGATTC TAACCTCTAC CTCCCAGCTT CTGCCTGAGC AAGCTGCTTC TTCTCTGAGA
  GCCCGCTTCT AACACAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	LP/J	SM/J
ss12772240	Tmprss4_JC8210_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T
ss24751050	Tmprss4_JC8210_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cJ	C57BL/6J	CAST/EiJ	LP/J	SM/J
rs8274947					SNP	C	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093621 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			129 bp upstream
Rr677858	regulatory region 677858			249 bp distal
Rr677859	regulatory region 677859			141 bp proximal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
				Splice-Site
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant