rs8274951 SNP Detail

Summary

• ID
  rs8274951
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094195 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCATCCTTCC TTCCTTTGTG
  CCTGCCTGCC TCTCTTCTTC CTTCCCTCCC TCCCTCCTTT ATTTCCTATT TCCTTTCCCT
  AAAAACACAG ACACAGGATT TATAAAGAAC CACGTTTGAA TCCCAGCACT TTCATTAACA
  AAGAGCATAG AGATAATTCC CCAGCGTCAG TTTCCTCAGA GTTACTAATG TCAATCTTAT
  W
  AGAGTTTTCT TTTCTCCCCA ACTTCCTCTC CTTTGCCCTT TCGTGAGAAG TCTTCCCCAA
  CCATAACACA CACAAAAAAC ATTTCATATG CAAAGTCATC TAGGTTAAAA TTTAGCAGGC
  AGGAAGGCTG GGGGTGTAGC TCTGGGGGTA GAGCACTTAC CTAGCACGTG CAAAGCCCTG
  AGTTCTGTTC TCTGCACTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	SPRET/EiJ
ss12772244	Tmprss4_JC8211_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	SPRET/EiJ
rs8274951					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094195 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			823 bp distal
Rr677859	regulatory region 677859			34 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant