rs8274952 SNP Detail

Summary

• ID
  rs8274952
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094177 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGCCTGCCTG CCTCTCTTCT
  TCCTTCCCTC CCTCCCTCCT TTATTTCCTA TTTCCTTTCC CTAAAAACAC AGACACAGGA
  TTTATAAAGA ACCACGTTTG AATCCCAGCA CTTTCATTAA CAAAGAGCAT AGAGATAATT
  CCCCAGCGTC AGTTTCCTCA GAGTTACTAA TGTCAATCTT ATAAGAGTTT TCTTTTCTCC
  S
  CAACTTCCTC TCCTTTGCCC TTTCGTGAGA AGTCTTCCCC AACCATAACA CACACAAAAA
  ACATTTCATA TGCAAAGTCA TCTAGGTTAA AATTTAGCAG GCAGGAAGGC TGGGGGTGTA
  GCTCTGGGGG TAGAGCACTT ACCTAGCACG TGCAAAGCCC TGAGTTCTGT TCTCTGCACT
  TGAAAACAAA AATAGCAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772245	Tmprss4_JC8211_5	ROCHEBIO	RPAMM	f	SNP	G				C	C	C									C
ss61388758	NES16766283	PERLEGEN	MM_PANEL2	r	SNP		C	G	G		G	G	G	G	G	C	C	G	G	C		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8274952					SNP	G	G	C	C	C	C	C	C	C	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388758	NES16766283	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094177 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			805 bp distal
Rr677859	regulatory region 677859			16 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant