rs8274955 SNP Detail

Summary

• ID
  rs8274955
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093907 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATGCAAAGTC ATCTAGGTTA
  AAATTTAGCA GGCAGGAAGG CTGGGGGTGT AGCTCTGGGG GTAGAGCACT TACCTAGCAC
  GTGCAAAGCC CTGAGTTCTG TTCTCTGCAC TTGAAAACAA AAATAGCAAG GACTAGCCTG
  GTTCTGTTGG GGCCATCACC AGAGGCCCAG TTCTCTCATG GAAGTGCGAA GCAGGAGTGG
  W
  AGGAAGGTAT GTGAAGGGTA ATTAGCATTA CATATAGTTA TATTCATTTG ATCTTGGCAG
  ACAGCTCAAA GCATGGTTAT TATTAAATCT GTGTTAGAAG CGGGCTCTCA GAGAAGAAGC
  AGCTTGCTCA GGCAGAAGCT GGGAGGTAGA GGTTAGAATC TGTACCTGCT TTAACCCATT
  CCTGGACACC ATGAGTTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772248	Tmprss4_JC8211_8	ROCHEBIO	RPAMM	f	SNP	A					T	T	T							A
ss61388760	NES16766281	PERLEGEN	MM_PANEL2	r	SNP		T		A	A	A		A	A	A	T	T	A	T		A
ss136406364	ENSMUSSNP7115232	ENSEMBL	ENSEMBL_Sanger	r	SNP			T	A					A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8274955					SNP	A	A	A	T	T	T	T	T	T	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388760	NES16766281	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093907 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			535 bp distal
Rr677859	regulatory region 677859			within coordinates
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant