rs8275021 SNP Detail

Summary

• ID
  rs8275021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45092738 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCCA GCACCTAGTT CATCAAGAAA
  R
  TGTTTGCAGT CCTATCTGAG TGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss12772314	Tmprss4_JC8222_2	ROCHEBIO	RPAMM	f	SNP			A	A	A	G				G
ss136406328	ENSMUSSNP3669890	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	T					T
ss322942033	CHEV_9_44989523	CHEVERUD	SCREENING_POP	r	SNP								T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs8275021					SNP	A	A	A	A	A	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45092738 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			1012 bp upstream
Rr677858	regulatory region 677858			291 bp proximal
Rr677859	regulatory region 677859			1024 bp proximal
Smim35	small integral membrane protein 35			567 bp upstream
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant