rs8275022 SNP Detail

Summary

• ID
  rs8275022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                         TGGg gaanggaaaa aggaaataag
  ggaggtaggc agngnggaaa gaanggaggc nggcaggcac aaaggaagga aggnaggaag
  R
  anggnaggna ggnaggaCGG CAGGCAGAGA GGTTGCTGGC GTGAGGTGAC AGCTTCCTAT
  GGCCCNGATT GAGTACCTGT CATAGCCCAT CTGTCTGCAG GCTGTCTTGG CCAGTGCTTC
  TGTGAAGTTG TCGAAACAGA CTGAGGCCCA GGTCCCTGTG GCTGCATCCA GCACCTGCAG
  GGTGGATCTG TCCTTGGAGA GCCGGACTAG GAGGGAAGGN GCCTGGGTCA GCTGGAGGGT
  ANGGCCACTT TANCCAAGAC CCTTGGAACA TGNCATGAGA CNAGCCCCCT CCCTTGCCGC
  TGCTCCCCAA CCCAGAACTG AGNACATGTT CAACCTCAAG GGAAGTTCTT CCAGTTGACT
  AGAGCCTAAT TTGGANGGCA GCTACGGGAA AACTTGACCA GCTGCCCAGG GACAACGACT
  GACAGCCTCT CTTTCTGCTC AGATAAGTAT CAGCTTCNAT GACCACTGAC AAAATTGCTT
  TACCATGGCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772315	Tmprss4_JC8223_1	ROCHEBIO	RPAMM	f	SNP	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8275022					SNP	A	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094399 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1027 bp distal
Rr677859	regulatory region 677859			238 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant