rs8275023 SNP Detail

Summary

• ID
  rs8275023
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                       TGGgga anggaaaaag gaaataaggg
  aggtaggcag ngnggaaaga anggaggcng gcaggcacaa aggaaggaag gnaggaagna
  M
  ggnaggnagg naggaCGGCA GGCAGAGAGG TTGCTGGCGT GAGGTGACAG CTTCCTATGG
  CCCNGATTGA GTACCTGTCA TAGCCCATCT GTCTGCAGGC TGTCTTGGCC AGTGCTTCTG
  TGAAGTTGTC GAAACAGACT GAGGCCCAGG TCCCTGTGGC TGCATCCAGC ACCTGCAGGG
  TGGATCTGTC CTTGGAGAGC CGGACTAGGA GGGAAGGNGC CTGGGTCAGC TGGAGGGTAN
  GGCCACTTTA NCCAAGACCC TTGGAACATG NCATGAGACN AGCCCCCTCC CTTGCCGCTG
  CTCCCCAACC CAGAACTGAG NACATGTTCA ACCTCAAGGG AAGTTCTTCC AGTTGACTAG
  AGCCTAATTT GGANGGCAGC TACGGGAAAA CTTGACCAGC TGCCCAGGGA CAACGACTGA
  CAGCCTCTCT TTCTGCTCAG ATAAGTATCA GCTTCNATGA CCACTGACAA AATTGCTTTA
  CCATGGCC                                                         
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772316	Tmprss4_JC8223_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8275023					SNP	A	A	A	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094401 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1029 bp distal
Rr677859	regulatory region 677859			240 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant