rs8275025 SNP Detail

Summary

• ID
  rs8275025
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                               TGG ggaanggaaa aaggaaataa gggaggtagg
  cagngnggaa agaanggagg cnggcaggca caaaggaagg aaggnaggaa gnanggnagg
  M
  aggnaggaCG GCAGGCAGAG AGGTTGCTGG CGTGAGGTGA CAGCTTCCTA TGGCCCNGAT
  TGAGTACCTG TCATAGCCCA TCTGTCTGCA GGCTGTCTTG GCCAGTGCTT CTGTGAAGTT
  GTCGAAACAG ACTGAGGCCC AGGTCCCTGT GGCTGCATCC AGCACCTGCA GGGTGGATCT
  GTCCTTGGAG AGCCGGACTA GGAGGGAAGG NGCCTGGGTC AGCTGGAGGG TANGGCCACT
  TTANCCAAGA CCCTTGGAAC ATGNCATGAG ACNAGCCCCC TCCCTTGCCG CTGCTCCCCA
  ACCCAGAACT GAGNACATGT TCAACCTCAA GGGAAGTTCT TCCAGTTGAC TAGAGCCTAA
  TTTGGANGGC AGCTACGGGA AAACTTGACC AGCTGCCCAG GGACAACGAC TGACAGCCTC
  TCTTTCTGCT CAGATAAGTA TCAGCTTCNA TGACCACTGA CAAAATTGCT TTACCATGGC
  C                                                                
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss12772318	Tmprss4_JC8223_4	ROCHEBIO	RPAMM	f	SNP	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs8275025					SNP	C	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094408 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1036 bp distal
Rr677859	regulatory region 677859			247 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant