rs8275028 SNP Detail

Summary

• ID
  rs8275028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCAGAG AGGTTGCTGG
  CGTGAGGTGA CAGCTTCCTA TGGCCCCGAT TGAGTACCTG TCATAGCCCA TCTGTCTGCA
  GGCTGTCTTG GCCAGTGCTT CTGTGAAGTT GTCGAAACAG ACTGAGGCCC AGGTCCCTGT
  GGCTGCATCC AGCACCTGCA GGGTGGATCT GTCCTTGGAG AGCCGGACTA GGAGGGAAGG
  Y
  GCCTGGGTCA GCTGGAGGGT AGGGCCACTT TATCCAAGAC CCTTGGAACA TGTCATGAGA
  CCAGCCCCCT CCCTTGCCGC TGCTCCCCAA CCCAGAACTG AGGACATGTT CAACCTCAAG
  GGAAGTTCTT CCAGTTGACT AGAGCCTAAT TTGGATGGCA GCTACGGGAA AACTTGACCA
  GCTGCCCAGG GACAACGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12772321	Tmprss4_JC8223_7	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	C	C	C							C
ss61388755	NES16766286	PERLEGEN	MM_PANEL2	f	SNP		T	C	C		C		C		C	C	T	T	C	T		C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8275028					SNP	T	T	C	C	C	C	C	C	C	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388755	NES16766286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1247 bp distal
Rr677859	regulatory region 677859			458 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant