rs8275030 SNP Detail

Summary

• ID
  rs8275030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTATGG CCCCGATTGA
  GTACCTGTCA TAGCCCATCT GTCTGCAGGC TGTCTTGGCC AGTGCTTCTG TGAAGTTGTC
  GAAACAGACT GAGGCCCAGG TCCCTGTGGC TGCATCCAGC ACCTGCAGGG TGGATCTGTC
  CTTGGAGAGC CGGACTAGGA GGGAAGGCGC CTGGGTCAGC TGGAGGGTAG GGCCACTTTA
  K
  CCAAGACCCT TGGAACATGT CATGAGACCA GCCCCCTCCC TTGCCGCTGC TCCCCAACCC
  AGAACTGAGG ACATGTTCAA CCTCAAGGGA AGTTCTTCCA GTTGACTAGA GCCTAATTTG
  GATGGCAGCT ACGGGAAAAC TTGACCAGCT GCCCAGGGAC AACGACTGAC AGCCTCTCTT
  TCTGCTCAGA TAAGTATCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772323	Tmprss4_JC8223_9	ROCHEBIO	RPAMM	f	SNP	G			T	T	T	T	T	G
ss136406376	ENSMUSSNP2060467	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8275030					SNP	G	G	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094652 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1280 bp distal
Rr677859	regulatory region 677859			491 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant